PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00293.1_g00041.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 278aa    MW: 32085.5 Da    PI: 8.91
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00293.1_g00041.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3361.3e-11321111397
                              TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                              ++  ++p +f+++ +g    +  l++  ++g+sW+v l  ++  ++ ++ ++ W eFv++n L+ +D+++F++++++ +   v+++
  Rsa1.0_00293.1_g00041.1  32 KSKRIIPEEFVRRTNGA--FKHRLVFSVSWGNSWQVWL--QRDENGlFMEEEDWDEFVDDNLLDPNDILIFTHVHTMFT--EVRIY 111
                              455799*****999655..4447***************..88888879999*********************9997766..55555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-1314114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-1415114IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-1017112No hitNo description
SMARTSM010191.3E-1319114IPR003340B3 DNA binding domain
PROSITE profilePS5086311.12420114IPR003340B3 DNA binding domain
PfamPF023621.1E-931109IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-7176272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-6177271IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0011183274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTLNSAFDLL QENASKPRFC KSLSLGETWK SKSKRIIPEE FVRRTNGAFK HRLVFSVSWG  60
NSWQVWLQRD ENGLFMEEED WDEFVDDNLL DPNDILIFTH VHTMFTEVRI YKKDSRFFKQ  120
VISSPLLAAE VLSPKPQTFR QDTPSSASPG FASASASASR ARQSCSSVQN PEQYLLNPQN  180
PYFVKTLSKK IDVLYVNQDV IQKYGLKFGP HLSPVHYLLP REKHEAVLKI YRNNTPCFNR  240
WAAICKKYDK KEGDSVVCEL ERDSRGVVTA VRVHFVNE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895207e-87AC189520.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091J13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129961.11e-155PREDICTED: B3 domain-containing protein At5g25470-like
SwissprotQ1PDT66e-99Y5547_ARATH; B3 domain-containing protein At5g25470
TrEMBLA0A078EY321e-155A0A078EY32_BRANA; BnaA02g31970D protein
TrEMBLM4DVF71e-155M4DVF7_BRARP; Uncharacterized protein
STRINGBra020501.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25470.23e-88B3 family protein